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Go to Appendix H: Indexed adapter sequences in the xGen RNA Library Prep Kit Protocol for details about the adapter sequences and structure of the xGen™ RNA Library Prep Kit adapters and indexing primer kits.
Please contact Scientific Application Support at applicationsupport@idtdna.com if you wish to confirm compatibility of your own custom indexing primers with the stubby adapters supplied in the xGen RNA Library Prep Kit workflows.